Publications
| List of publications | |
2002 | |
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D. Harmsen, J. Rothgaenger, M. Sammeth, and J. Albert (2002) Ribosomal Differentiation of Medical Microorganisms (RIDOM) Nucl. Acids Res.: online database summary |
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[Full Text] |
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2003 | |
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M. Sammeth, J. Rothgaenger, W. Esser, J. Albert, J. Stoye, and D. Harmsen (2003) QAlign: Quality Based Multiple Alignments with Dynamic Phylogenetic Analysis Bioinformatics 19:1592-1593 |
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[Pre-Print Abstract] |
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M. Sammeth, B. Morgenstern, and J. Stoye (2003) Divide-and-Conquer Alignment with Segment-Based Constraints Bioinformatics 19: II189-II195 |
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[Pre-Print Abstract] [Full Text] |
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D. Harmsen, S. Dostal, A. Roth, S. Niemann, J. Rothg�ger, M. Sammeth, J. Albert, M. Frosch, and E. Richter (2003) RIDOM: Comprehensive and public sequence database for identification of Mycobacterium species BMC Infectious Diseases 3:26 |
| [Full Text] | |
2005 | |
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M. Sammeth, and J. Stoye (2005) Alignment of tandem repeats with excision, duplication, substitution and indels (EDSI) Technical Report 2005-05 (ISSN 0946-7831) |
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[Full Text] | |
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M. Sammeth, T. Weniger, D. Harmsen, and J. Stoye (2005) Alignment of tandem repeats with excision, duplication, substitution and indels (EDSI) LNBI (Proceedings of WABI '05) 3692: 276-290 |
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[Proceedings] | |
2006 | |
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M. Sammeth, and J. Heringa (2006) Global Multiple Alignment with Repeats Proteins: Structure, Functions and Bioinformatics 64: 263-274 |
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[Early View] | |
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M. Sammeth, T. Griebel, F. Tille, and J. Stoye (2006) Panta rhei (QAlign2): an Open Graphical Environment for Sequence Analysis Bioinformatics 22: 889-890 |
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[Access] | |
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M. Sammeth, and J. Stoye (2006) Comparing Tandem Repeats assuming Duplications and Excisions of Variable Degree IEEE/ACM Transactions on Computational Biology and Bioinformatics 3: 395-407 |
2007 | |
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S. Foissac, and M. Sammeth (2007) ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets Nucleic Acids Res. (Web Server issue): W297-9 | |
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A. Mellmann, T. Weniger, C. Berssenbrügge, J. Rothgänger, M. Sammeth, J. Stoye, and D. Harmsen (2007) Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms BMC Microbiol. 29: 98 | |
2008 | |
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M. Sammeth, S. Foissac, and R. Guigo (2008) A General Definition and Nomenclature for Alternative Splicing Events PLoS Computational Biology in press | |
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M. Sammeth (2008) Complete Alternative Splicing Events to appear in Journal of Computational Biology | |
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