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Flux Capacitor
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1 - Introduction
2 - Download
3 - Getting Started
4 - Annotation Mapping
5 - Deconvolution
6 - Quantified Elements
Appendix A - File Format Specifications
Appendix B - Frequently Asked Questions (FAQ)
Appendix C - JIRA Issue Tracker
Appendix D - Forum
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Created by
Micha Sammeth
, last modified on
Jan 14, 2014
For reporting bugs please go to the
JIRA Issue Tracker
, to ask a question visit the
Forum
.
1 - Introduction
2 - Download
1.0.1 Release Notes
1.0.2 Release Notes
1.1 Release Notes
1.2 Release Notes
1.2.1 Release Notes
1.2.2 Release Notes
1.2.3 Release Notes
1.2.4 Release Notes
1.3 Release Notes
1.4 Release Notes
1.5.1 Release Notes
1.5.2 Release Notes
1.6 Release Notes
1.6.1 Release Notes
3 - Getting Started
3.1 - System Requirements
3.2 - Starting the Flux Capacitor
3.3 - Examples
Geuvadis Quantifications
GTEx Quantifications
4 - Annotation Mapping
4.1 - Segment Graph
4.2 - Read Mapping
5 - Deconvolution
5.1 - Linear Program
5.2 - Bias estimation
6 - Quantified Elements
6.3 Intron Quantifications
Appendix A - File Format Specifications
BAM - Mapping Locations
BED - Insert File
JSON - Profile File
PAR - Parameters
Read Descriptors
Appendix B - Frequently Asked Questions (FAQ)
Appendix C - JIRA Issue Tracker
Appendix D - Forum
D.1 - FAQ (Frequently Asked Questions)
Analysis of Geuvadis Dataset using Flux-Capacitor.
Cant find tool capacitor
Flux Capacitor output files
Flux Capcacitor error: java.lang.OutOfMemoryError: Java heap space with FLUX_MEM=16G
How to get name and sequence of reads mapped to a particular gene
How to quantify multiple bam files
How to quantify the expression value of transcript in RPKM
Overlapping transcripts - RPKM NAN
Problems working with BAM files
Understanding RPKM values
You cannot specify a READ_Descriptor for BAM files
D.2 - Annotation Mapping
D.3 - Bias Estimation
D.4 - Deconvolution
Recently Updated
1.0.2 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.1 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.2 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.2.1 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.2.2 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.2.3 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
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1.2.4 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.3 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
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1.4 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.5.1 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.5.2 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.6 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
1.6.1 Release Notes
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
2 - Download
Jan 23, 2020
•
updated by
Micha Sammeth
•
view change
Flux Capcacitor error: java.lang.OutOfMemoryError: Java heap space with FLUX_MEM=16G
Dec 03, 2015
•
commented by
christopher gillies
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